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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10773138_10777020_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10773138 - 10777020
Intron Length:
3883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTACGTAAC
5'SS Class:
major
3'SS Sequence:
TGCGTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TGCGTCTCCACA
Flanking Amino Acid:
HNFEVAFSSAEMLADCVPLV
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
66.2
39.8
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
71.4
0.48
0.9
64.6
36.6
Minor 5ss
36.2
-1.6
2.9
41.5
39.2
Minor BPS
45
-0.4
2
55.34
43.9

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040843
10772093 - 10797037
24945