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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10777173_10777249_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10777173 - 10777249
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
CCCTTGGTAACT
Flanking Amino Acid:
WCRAKTRGYEHVDIQNFSSS
Intron Amino Acid Position:
1064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
43.8
-0.3
2.5
61.99
48.4

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945