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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10777374_10777450_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10777374 - 10777450
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTTTCTCCTACA
Flanking Amino Acid:
MIEKLQKEGGSSPNPAAART
Intron Amino Acid Position:
1022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77.5
32.3
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
90
0.9
0.6
84.8
23.1
Minor 5ss
27.1
-2.6
2.9
31.6
42.4
Minor BPS
49.1
-0
2.1
72.55
39

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040843
10772093 - 10797037
24945
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945
ENSAPLT00000013207
10772093 - 10797037
24945