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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10777622_10777985_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10777622 - 10777985
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGCAT
U12 Branch Point Sequence:
TCTGCACTGACT
Flanking Amino Acid:
SYSSSSKKTGSIFDREDETA
Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
54.9
0.12
1.4
67
39.8
Major PPT
78.4
0.64
0.9
69.2
41.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
49
0
2.1
73.19
43.6

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945