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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10778050_10778189_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10778050 - 10778189
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
CCTGCCTGAGGC
Flanking Amino Acid:
MESSYVKRTDNGSSTFVQTK
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66.6
37.3
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
35.3
-1.7
3.5
54.4
43.3
Minor BPS
43.3
-0.5
2
50.45
46.3

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029245
10772093 - 10797037
24945
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945
ENSAPLT00000032762
10772093 - 10797037
24945