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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10778253_10779114_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10778253 - 10779114
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TTCCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
CTGATCCCACTT
Flanking Amino Acid:
VTKTERLIQSNDGTKTSRTT
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
62.2
36.3
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
82.7
0.74
0.7
76.8
25.1
Minor 5ss
31.4
-2.1
3.5
40.4
40.9
Minor BPS
39.2
-0.7
1.9
52.68
42.8

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945