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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10780046_10783791_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10780046 - 10783791
Intron Length:
3746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAG
U12 Branch Point Sequence:
GCGTGTGGCACT
Flanking Amino Acid:
SICISSNVVKMEPEAVEQPQ
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
46.9
-0.1
1.7
42.8
49.4
Major PPT
77.2
0.61
0.9
69.9
35.9
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
34
-1.1
2.4
48.33
45

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032762
10772093 - 10797037
24945