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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10783884_10784912_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10783884 - 10784912
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
GCTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGAGCAA
U12 Branch Point Sequence:
GCTTCCTTTACA
Flanking Amino Acid:
VVAAPGSQRAELTLGLRSTP
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
38.6
-0.7
1.4
37.5
42.1
Major PPT
82.6
0.73
0.8
75.9
32.7
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
71.6
0.67
1.6
76.35
40.5

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945