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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10785737_10786854_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10785737 - 10786854
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TCTCCAACCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
TCCTCTCCAACC
Flanking Amino Acid:
KAVKLEEKRAAPTRDAARTP
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
70.6
0.46
0.9
67
32.8
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
49.7
-0
1.9
62.86
42.9

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040843
10772093 - 10797037
24945
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945
ENSAPLT00000013207
10772093 - 10797037
24945