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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10786919_10787135_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10786919 - 10787135
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGAA
5'SS Class:
major
3'SS Sequence:
TCCCCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
GCTCACTGCACT
Flanking Amino Acid:
QPGAVSQGNQFVICVRGQAS
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.6
37.9
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
78.7
0.65
0.7
72.7
25.4
Minor 5ss
26.5
-2.7
3.7
36.6
47.9
Minor BPS
45.7
-0.2
2.1
64.41
45.1

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945