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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10787241_10787333_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10787241 - 10787333
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCAGCCA
5'SS Class:
weak_major
3'SS Sequence:
CTCTGCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGACAA
U12 Branch Point Sequence:
AGAGCCCCAGCA
Flanking Amino Acid:
PEDHPTELEQEPHAEQLETP
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.4
47.6
42.6
Major BPS
46.8
-0.2
1
50.7
34.3
Major PPT
67.8
0.4
0.9
61.8
33.8
Minor 5ss
24.7
-2.9
3.2
31.6
42.2
Minor BPS
40.7
-0.7
2
49.05
40.9

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013207
10772093 - 10797037
24945