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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10787450_10787717_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10787450 - 10787717
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
TTCCCCTGCATG
Flanking Amino Acid:
LRGPQKPSAQGTASGALVIL
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.6
39.4
Major BPS
50.1
0
1.4
63
43.2
Major PPT
78.8
0.65
0.7
73.5
24.7
Minor 5ss
28.6
-2.5
2.7
25.4
36.3
Minor BPS
48
-0.3
2
57.5
44.3

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945