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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10789756_10789965_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10789756 - 10789965
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GGCCCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GCTGCTCTGATG
Flanking Amino Acid:
HRQDNKENWLRSQQLEEEQQ
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.1
33
Major BPS
79
0.72
1
69
38.9
Major PPT
61.6
0.26
1
53.8
36.6
Minor 5ss
31.1
-2.2
2.6
35.6
40.5
Minor BPS
45.1
-0.5
1.8
47.08
40.8

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945