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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10790127_10796509_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10790127 - 10796509
Intron Length:
6383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
CAGCACTGAGCC
Flanking Amino Acid:
GMDEGALRKLLEATLDLAER
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
74.2
0.54
0.8
65
36.3
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
42.9
-0.5
1.8
47.35
41.2

Associated Gene:

Gene:
SMTN
Ensembl Gene ID:
ENSAPLG00000012665
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013207
10772093 - 10797037
24945
ENSAPLT00000040843
10772093 - 10797037
24945
ENSAPLT00000032762
10772093 - 10797037
24945
ENSAPLT00000029245
10772093 - 10797037
24945