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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10810104_10816020_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10810104 - 10816020
Intron Length:
5917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTCAGTGTAACC
Flanking Amino Acid:
QLTFEYLHTNSTTHEFLFGA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
67.6
37.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
33.1
-1.9
2.6
38.9
32.7
Minor BPS
43.5
-0.5
2.3
55.06
43.4

Associated Gene:

Gene:
MORC2
Ensembl Gene ID:
ENSAPLG00000012745
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013319
10810036 - 10847220
37185