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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10825601_10826897_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10825601 - 10826897
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGGACA
5'SS Class:
major
3'SS Sequence:
ATGCTATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCTAT
U12 Branch Point Sequence:
TAGGTCTGAGTT
Flanking Amino Acid:
TFHEEEGIDEVIVPLPTWNA
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
66.1
38.9
Major BPS
49.9
-0
1.4
50.2
44.9
Major PPT
76.8
0.6
0.9
70.2
39.7
Minor 5ss
35
-1.7
2.8
41.4
44.7
Minor BPS
46.7
-0.1
1.7
61.3
43

Associated Gene:

Gene:
MORC2
Ensembl Gene ID:
ENSAPLG00000012745
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013319
10810036 - 10847220
37185