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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10827058_10827139_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10827058 - 10827139
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAA
U12 Branch Point Sequence:
TTCACCTGATCA
Flanking Amino Acid:
EQFNKIRGEKGTLVIIFNLK
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
36.9
Major BPS
63.9
0.34
1.2
66
40.9
Major PPT
69.8
0.45
0.9
69
37
Minor 5ss
42.7
-0.8
3.2
57.8
47.2
Minor BPS
55.6
0.17
1.8
69.17
42.9

Associated Gene:

Gene:
MORC2
Ensembl Gene ID:
ENSAPLG00000012745
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013319
10810036 - 10847220
37185