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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10828084_10831499_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10828084 - 10831499
Intron Length:
3416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGATCATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGCTAATTAAGT
Flanking Amino Acid:
KRLSCCLYKPRMYKYTSNRF
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
85.2
32.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
72.4
0.5
0.9
65.8
39.6
Minor 5ss
42.3
-0.9
3.5
64.1
47.4
Minor BPS
49.5
0.04
2.1
70.99
45.3

Associated Gene:

Gene:
MORC2
Ensembl Gene ID:
ENSAPLG00000012745
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013319
10810036 - 10847220
37185