About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10833618_10835455_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10833618 - 10835455
Intron Length:
1838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CATTCTTTTACA
Flanking Amino Acid:
VKKRIKEAKQRALKEPKELN
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.6
0.8
0.8
79.7
32
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
65.5
0.48
1.6
71.96
40.5

Associated Gene:

Gene:
MORC2
Ensembl Gene ID:
ENSAPLG00000012745
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013319
10810036 - 10847220
37185