About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10843377_10843467_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10843377 - 10843467
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
CTAATCTGAGCT
Flanking Amino Acid:
EKDSSEVVVELTDSAGEEEL
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
82.4
0.73
0.8
75.8
32.8
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
48.7
-0
1.7
66.31
43.9

Associated Gene:

Gene:
MORC2
Ensembl Gene ID:
ENSAPLG00000012745
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013319
10810036 - 10847220
37185