About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10844814_10844912_F


Intron Information:

Intron Rank:
23

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
10844814 - 10844912

Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCG|GTGGGTTCA

5'SS Class:
major

3'SS Sequence:
CTTTCCTGCATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATCTCAA

U12 Branch Point Sequence:
CTTTCCTGCATA

Flanking Amino Acid:
ETVDLLAQILRNCLRYFLPP

Intron Amino Acid Position:
908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.9
0.54
1.1
65
37.4

Major BPS
76.9
0.67
0.8
77.7
26.1

Major PPT
72.4
0.5
0.9
68.4
31.9

Minor 5ss
34.1
-1.8
3.1
41.3
45.2

Minor BPS
57.3
0.22
1.9
71.86
40.7

Associated Gene:

Gene:
MORC2

Ensembl Gene ID:

Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10810036 - 10847220
37185