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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10845007_10845703_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10845007 - 10845703
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTCTTCTACA
Flanking Amino Acid:
SSEGLLAFPLKEYFKQYEVG
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.6
0.8
0.8
80.4
31.7
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
56.5
0.2
1.9
71.31
40.9

Associated Gene:

Gene:
MORC2
Ensembl Gene ID:
ENSAPLG00000012745
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013319
10810036 - 10847220
37185