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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1085096_1085840_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1085096 - 1085840
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TCTGATAATGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTCTGATAATG
Flanking Amino Acid:
IKMNRSHLHAAGHI
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
58.1
0.18
1.2
57.7
41.2
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
44.1
-0.5
2.2
54.07
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011924
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012435
1085082 - 1123678
38597