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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1085990_1089555_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1085990 - 1089555
Intron Length:
3566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCCTTCTCATCT
Flanking Amino Acid:
HLYKGGRLLQGSRIPFGIIF
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.6
0.73
0.9
76.6
37.2
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
48.4
-0
1.9
62.9
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011924
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012435
1085082 - 1123678
38597