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Intron Name: Anas_platyrhynchos_platyrhynchos_16_10875074_10878566_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10875074 - 10878566

Intron Length:

3493

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCGGG

5'SS Class:

major

3'SS Sequence:

TGTTTCTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

GGGCCACCAAGC

Flanking Amino Acid:

PAIVKEQVVKNVRIDPSSIS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.3

47.1

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

86.6

0.82

0.7

81.5

30.6

Minor 5ss

31.2

-2.2

3.2

38.7

46.4

Minor BPS

35.5

-1.1

40.21

38.1

Associated Gene:

Gene:

SCARB1

Ensembl Gene ID:

ENSAPLG00000013154

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013745

10874954 - 10890197

15244

ENSAPLT00000048331

10874954 - 10893236

18283