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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10878725_10880450_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10878725 - 10880450
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGTAC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
AGGTTCCCATGG
Flanking Amino Acid:
ILRQRGPYVYREFRYKTNIT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
70
37.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
32.4
-2
3.2
41.1
45.5
Minor BPS
34.8
-1.2
2
34.94
39.7

Associated Gene:

Gene:
SCARB1
Ensembl Gene ID:
ENSAPLG00000013154
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048331
10874954 - 10893236
18283
ENSAPLT00000013745
10874954 - 10890197
15244