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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10880593_10881043_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10880593 - 10881043
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
GTCTCAGAGACT
Flanking Amino Acid:
YIVMPNILMLGASVMMENLP
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
84.5
0.78
0.8
77.2
36.4
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
42.5
-0.5
2.5
64.81
45.7

Associated Gene:

Gene:
SCARB1
Ensembl Gene ID:
ENSAPLG00000013154
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013745
10874954 - 10890197
15244
ENSAPLT00000048331
10874954 - 10893236
18283