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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10881656_10881785_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10881656 - 10881785
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCCACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TCTCTCTGCATC
Flanking Amino Acid:
MVDSWNGLKKVNYWRSTGCN
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
66.3
0.37
0.9
58.7
31.9
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
47.3
-0.2
1.9
59.85
39.8

Associated Gene:

Gene:
SCARB1
Ensembl Gene ID:
ENSAPLG00000013154
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048331
10874954 - 10893236
18283
ENSAPLT00000013745
10874954 - 10890197
15244