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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10881899_10883606_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10881899 - 10883606
Intron Length:
1708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GAAACTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TAACCCTGATCC
Flanking Amino Acid:
SLEFYSPDACRSMTLVYEQS
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
62
0.3
1
53
34.1
Major PPT
66.2
0.37
1
54.9
45.1
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
52.2
0.05
1.7
63.64
40.9

Associated Gene:

Gene:
SCARB1
Ensembl Gene ID:
ENSAPLG00000013154
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013745
10874954 - 10890197
15244
ENSAPLT00000048331
10874954 - 10893236
18283