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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10887109_10887554_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10887109 - 10887554
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
ATGCCTATAACA
Flanking Amino Acid:
VVLPLLWFAESGNIEGSVLN
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
74.2
0.54
1
72.5
37.6
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
58.5
0.26
1.6
68.31
37.7

Associated Gene:

Gene:
SCARB1
Ensembl Gene ID:
ENSAPLG00000013154
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048331
10874954 - 10893236
18283
ENSAPLT00000013745
10874954 - 10890197
15244