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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10887702_10890077_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10887702 - 10890077
Intron Length:
2376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
GATTATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TGCACCATAAAC
Flanking Amino Acid:
SAAVLTMMSQEKCSLFWSSN
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
72.4
0.5
0.9
63
43.5
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
51.2
0.02
1.8
62.66
41.9

Associated Gene:

Gene:
SCARB1
Ensembl Gene ID:
ENSAPLG00000013154
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013745
10874954 - 10890197
15244