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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_10887702_10892741_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10887702 - 10892741
Intron Length:
5040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GGGGTTGTGACT
Flanking Amino Acid:
SAAVLTMMSQRPTDEKSLCD
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
42.8
-0.4
2
54.96
41.7

Associated Gene:

Gene:
SCARB1
Ensembl Gene ID:
ENSAPLG00000013154
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048331
10874954 - 10893236
18283