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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1094958_1101898_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1094958 - 1101898
Intron Length:
6941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGATAATT
5'SS Class:
major
3'SS Sequence:
TTTTTCAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
AAEWVCLCDDGIKTTPSETF
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
75.2
33.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.7
0.65
0.9
74.2
34.3
Minor 5ss
34.2
-1.8
3.2
46.5
42.9
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011924
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012435
1085082 - 1123678
38597