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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1101956_1113229_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1101956 - 1113229
Intron Length:
11274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACTC
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGATTTTTAAAA
Flanking Amino Acid:
FDWCRFLQNADIPTDRDNLH
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.4
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
42.7
-0.8
3.1
59.9
44.6
Minor BPS
60.7
0.33
1.3
64.4
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011924
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012435
1085082 - 1123678
38597