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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11052587_11057935_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11052587 - 11057935
Intron Length:
5349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAC
U12 Branch Point Sequence:
TTTCCTTCCACA
Flanking Amino Acid:
QQISKLKKKQQQLEEEAAKP
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
59.5
0.24
1.2
63.3
35.6
Major PPT
84.6
0.78
0.7
80
25.5
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
54
0.12
2
73.01
38.9

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234