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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11058050_11068677_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11058050 - 11068677
Intron Length:
10628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTCT
U12 Branch Point Sequence:
TTTGCTTTCCCT
Flanking Amino Acid:
LVQIIYDENRKKAEAAHRIL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
33.2
-1
4.2
59.6
46.8
Major PPT
79.1
0.66
0.7
73
25.2
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
43.4
-0.4
3.6
78.9
44

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234