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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11072456_11082641_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11072456 - 11082641
Intron Length:
10186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCTCTTACA
Flanking Amino Acid:
DTRQYHENIKINQAMRKKLI
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.4
37.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
93
0.97
0.6
88.1
21.9
Minor 5ss
38.5
-1.3
2.7
48.6
40.2
Minor BPS
61.9
0.37
1.9
80.2
35.2

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234