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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11087254_11088401_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11087254 - 11088401
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGAAGG
5'SS Class:
major
3'SS Sequence:
CCTTTCCCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGTTTCTGAATG
Flanking Amino Acid:
QERMQRLEEKRVGQRGSGGL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
57.7
47
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.9
0.56
0.8
70.6
28.9
Minor 5ss
32
-2.1
3.2
40.4
45.5
Minor BPS
61.1
0.21
1.5
63.23
38.7

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234