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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11090926_11093899_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11090926 - 11093899
Intron Length:
2974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTCACACTAACC
Flanking Amino Acid:
SEQEKETFREKFMQHPKNFG
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.9
29.7
Major BPS
79
0.72
1
69
38.9
Major PPT
72.2
0.5
0.9
65.1
36.1
Minor 5ss
29.2
-2.4
3.1
32.8
35.7
Minor BPS
48.1
-0.1
2
61.25
43.7

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234