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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11095890_11108760_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11095890 - 11108760
Intron Length:
12871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTCTTTTACG
Flanking Amino Acid:
RNYRRRGKSQQQQQMPRSSQ
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
85.1
0.79
0.8
79.6
32.3
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
73.2
0.59
1.6
79.44
36.9

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234