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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11108886_11109771_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11108886 - 11109771
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGCA
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
ATTTCCTCACTC
Flanking Amino Acid:
ETENDKEELTKDKNDDTSGE
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.8
36.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
38.3
-1.3
3.3
48.1
42
Minor BPS
60.1
0.3
1.8
73.03
38.2

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234