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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11109945_11113856_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11109945 - 11113856
Intron Length:
3912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCGTAGC
5'SS Class:
major
3'SS Sequence:
CTCCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCCCCACTGACC
Flanking Amino Acid:
AAAPQQSAELASLEMNESSR
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
63.3
43.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
70.7
0.47
0.7
61.5
29
Minor 5ss
29.1
-2.4
2.8
27.7
36.1
Minor BPS
46.2
-0.3
1.9
57.45
41.2

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234