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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11123111_11127650_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11123111 - 11127650
Intron Length:
4540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCTTCTCACCT
Flanking Amino Acid:
EILQQHKLKMEKERNAKRKK
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
74.7
35.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77
0.61
0.7
68.9
31.6
Minor 5ss
31.5
-2.1
3.2
39.8
40.4
Minor BPS
52.9
0.17
1.9
71.07
46.1

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234