About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11127799_11130639_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11127799 - 11130639
Intron Length:
2841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
NEEEMAEEAEAAVNNSSDTE
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84
0.77
0.7
83.1
25.3
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234