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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1113326_1114391_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1113326 - 1114391
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAATA
Flanking Amino Acid:
DPLYLVDVFSDWHRKDPSVH
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
64.2
0.44
2
80.44
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011924
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012435
1085082 - 1123678
38597