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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11140916_11141417_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11140916 - 11141417
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
AGTTCCCTAATA
Flanking Amino Acid:
EPHLFQYNSPGHPIPLNLHE
Intron Amino Acid Position:
907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
87.7
23.4
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
79
0.65
0.9
73.7
36.9
Minor 5ss
22.6
-3.2
3.8
32.5
42.3
Minor BPS
67.3
0.54
1.6
75.7
35.1

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234