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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11141742_11142418_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11141742 - 11142418
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCGTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
CCACGCTGATCT
Flanking Amino Acid:
LPLTMDPKKLVPFPGVKQEQ
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
81
0.7
0.9
72.6
42.4
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
42.3
-0.5
2
54.91
46.4

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234