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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11155402_11155556_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11155402 - 11155556
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCA
5'SS Class:
major
3'SS Sequence:
TCTTCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
AACCGCTTCATT
Flanking Amino Acid:
AIPRGIQLEAAAAYYLPRHL
Intron Amino Acid Position:
1479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
68.8
38.9
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
84
0.77
0.7
76.7
31.9
Minor 5ss
45
-0.5
2.8
59.8
44.6
Minor BPS
45.4
-0.2
2.1
60.61
43.3

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234