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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11156651_11156758_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11156651 - 11156758
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
TATTTGCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
CTTGCTTGTATT
Flanking Amino Acid:
TVEHAPIWRPGTEQSSSRSS
Intron Amino Acid Position:
1658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
51.9
47.5
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
71.2
0.48
0.9
63.1
39.2
Minor 5ss
42.3
-0.8
3.2
55.3
48.9
Minor BPS
48
-0
1.9
67.79
43.6

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234