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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11159761_11159911_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11159761 - 11159911
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGCAC
U12 Branch Point Sequence:
CTGGCTCCAGCT
Flanking Amino Acid:
GEHDPRQKQQASLKASAPEA
Intron Amino Acid Position:
1905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
43
-0.4
1.5
48.8
46.3
Major PPT
72.3
0.5
0.9
62.4
39.8
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
40.6
-0.6
2
56.28
46.3

Associated Gene:

Gene:
NCOR2
Ensembl Gene ID:
ENSAPLG00000013606
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014215
11051634 - 11170867
119234